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  FULLY FUNDED PROJECT: The manipulation of olive fly gut microbiota for improved pest control


   Institute of Integrative Biology

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Prof A Darby Prof N Hall  No more applications being accepted  Funded PhD Project (European/UK Students Only)

About the Project

The olive fly, Bactrocera oleae (Diptera: Tephritidae), is the primary pest of olives globally. Current control relies on intensive spraying of insecticides. However, larvae feed on the fruit, causing major crop losses in Greece, Spain and Italy. In Greece, the olive fly is considered the most serious agricultural insect pest. Current control methods rely overwhelmingly on insecticides. SIT is a species-specific and environmentally friendly method of pest control. Current SIT relies on irradiation to sterilise the target pest species but this can have a negative impact on the released insects’ performance. This and other problems associated with current SIT programmes could be overcome by the use of recombinant DNA methods. Oxitec Ltd is the world leader in developing such approaches and has developed a technique called RIDL (Release of Insects carrying a Dominant Lethal), which uses transgenic technology to overcome limitations of SIT. At Oxitec, we have developed RIDL female lethal strains for olive fly. This project seeks to build on this success by optimising the strains for eventual olive fly control in the field.

Implementation of SIT requires simple, efficient and cost-effective mass-rearing system that produces high-quality insects. Although, artificial diets have been developed that can replace olive as larval food, to permit large-scale factory rearing, they are expensive and not very effective. The objective of this studentship is to define the gut bacterial and fungal communities across developmental stages of Bactrocera oleae (larvae, pupae and adults) and understand the impact of gut microbial communities on the fitness of cultured and wild olive flies with the aim of improving diets for mass rearing.

The central hypothesis of this study is that the olive fly’s monophagic feeding behaviour is linked to specialised/symbiotic gut microbiota which facilitates the utilisation of the insect’s diet. This leads to the hypothesis that changes in this gut flora will result to changes in insect fitness. The student will fully profile the gut microbiota of olive flies from wild and lab populations in order to understand the gene composition and function of these communities. Comparing the gut flora of laboratory-reared and wild insects will further permit identification of bacterial species that are depleted by artificial diet. The student will also investigate how these communities affect host traits like metabolism, fecundity, immunity, mating and longevity.

Training:
The student will gain expertise in molecular biology, microbial analysis and culture, high-throughput sequencing and metagenomic analysis at the University of Liverpool, while will also benefit from the unique expertise of Oxitec in developing RIDL strains – microinjections, insect rearing and manipulation - and taking these strains to field cage and open-field assessment. The student will work closely with collaborations in Crete, Morocco and Spain who will permit the timely provision of wild olive fly from different locations for the purposes of this research.

Funding Notes

This project is a fully funded BBSRC Industrial CASE Awards awarded by the Biosciences Knowledge Transfer Network to the Food, Industrial Bioscience and Plants and crops Sectors. This BBSRC studentship is available to students from the UK (stipend and fees) or EU (fees only).

References

Behar & Yuval (2008). Enterobacteria-mediated nitrogen fixation in natural populations of the fruit fly Ceratitis capitata. B Mol. Ecol. 17, 1375-1386.

Haynes, S., A. C. Darby, et al. (2003). "Diversity of bacteria associated with natural aphid populations." Appl Environ Microbiol 69(12): 7216-7223.

Fu, G.; Condon, K. C.; Epton, M. J.; Gong, P.; Jin, L.; Condon, G. C.; Morrison, N. I.; Dafa’alla, T. H.; Alphey, L. (2007) Female-specific insect lethality engineered using alternative splicing. Nature Biotechnology, 25, 353-357.

Sacchetti et al. (2008). Relationships between the olive fly and bacteria. J. of Applied Entomology, doi: 10.1111/j.1439-0418.2008.01334.x

Where will I study?


Project supervisors

Career overview

Professor Alistair Darby is a Co-Director of the Centre for Genomic Research at the University of Liverpool and has over 20 years of experience in microbiome and microbial/host interactions. He possesses an international track record in researching human and zoonotic pathogens and their vectors. His scientific work employs genomic techniques to unlock biological processes, integrating molecular biology, technology, and bioinformatics to enhance the understanding of host-microbe interactions. This multidisciplinary approach fosters collaboration across various research teams, with Professor Darby providing genomic expertise to support diverse biological inquiries. He obtained a B.Sc. (Hons) in Biology with a 2:1 classification from the University of York, UK, in 1997. Following this, he completed a M.Sc. (Dic) in Applied Entomology at Imperial College, UK, in 1998. Professor Darby earned his Ph.D. in 2003, focusing on aphid symbiosis under the supervision of Professor A.E. Douglas at the University of York, UK.


Research interests

Professor Alistair Darby''s research focuses on microbiome and microbial/host interactions, with a particular emphasis on human and zoonotic pathogens and their vectors. He employs genomic techniques to enhance the understanding of biology, integrating molecular biology, technology, and bioinformatics. His work is multidisciplinary and highly collaborative, aimed at elucidating host-microbe interactions. Professor Darby brings unique genomic expertise to various research teams, contributing to the understanding of diverse biological systems.

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