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  Adaptive evolution of multi-host bacterial pathogens


   College of Medicine and Veterinary Medicine

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  Prof R Fitzgerald, Dr N Lynskey  No more applications being accepted  Funded PhD Project (Students Worldwide)

About the Project

Staphylococcus aureus is a major human and animal pathogen responsible for extensive human morbidity and economic losses on a global scale. The capacity to jump into distinct host-species leading to the emergence of new pathogenic clones is a feature of S. aureus and it is considered a model multi-host pathogen (Richardson et al, 2018). However, our understanding of the adaptive mechanisms associated with successful transition to a new host-species are limited. Previously, we have explored the early stages of a host jump event in vivo revealing signatures of host-adaptation and enhanced fitness (Bacigalupe et al, 2019). Here we will employ an experimental evolutionary approach to investigate how S. aureus adapts to human and livestock hosts using appropriate models of infection in vitro and ex vivo. Our previous research has identified strain-dependent differences in the evolvability when adapting to a new host species (Bacigalupe et al, 2019). We will examine this phenomenon using both host-restricted and multi-host clones associated with human and livestock diseases. Clones will be passaged In vitro in experimental infection systems such as organoids that simulate human, bovine and avian host-species to select for strains with enhanced growth fitness. Comparative genome sequencing and high-throughput phenotyping will identify genetic and functional traits associated with host-adaptation. Similarly, S. aureus strains previously passaged in an in vivo model of host-switching (Bacigalupe et al, 2019) will be examined to understand the mechanisms underpinning the observed enhanced fitness. Overall, the study will provide evolutionary and mechanistic insights into the capacity of some bacterial pathogens to expand into new host-species. Further, the findings may point to novel therapeutic targets for control of infection.

A webinar will be held on Tuesday 14th December at 13.00hrs (UK time) to assist you in the application process and tell you a little more about studying for a PhD with us. It will also give you an opportunity to ask any questions you may have. If interested in joining us please send your name and email address to [Email Address Removed] by Friday 10th December and we will send you a link to the on line meeting

 

ALL APPLICATION PROCEDURES MUST BE COMPLETED BY THE CLOSING DATE 5th JANUARY 2022

Biological Sciences (4)

Funding Notes

We would encourage applicants to list up to three projects of interest (ranked 1st, 2nd and 3rd choice) from those listed with a closing date of 5th January 2022 at https://www.ed.ac.uk/roslin/work-study/opportunities/studentships
This opportunity is open to UK and international students and provides funding to cover stipend, tuition fees and consumable/travel costs. Applications including a statement of interest and full CV with names and addresses (including email addresses) of two academic referees, should be emailed to [Email Address Removed].
When applying for the studentship please state clearly the project title/s and the supervisor/s in your covering letter.

References

Bacigalupe R, Tormo-Mas MÁ, Penadés JR, Fitzgerald JR. A multihost bacterial pathogen overcomes continuous population bottlenecks to adapt to new host species. Sci Adv. 2019 Nov 27;5(11):eaax0063. doi: 10.1126/sciadv.aax0063.
Richardson EJ, et al and Fitzgerald JR. Gene exchange drives the ecological success of a multi-host bacterial pathogen. Nat Ecol Evol. 2018 Sep;2(9):1468-1478. doi: 10.1038/s41559-018-0617-0.

Where will I study?