Faculty of Biology, Medicine and Health

The University of Manchester

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  (BBSRC DTP) Primary cilium mediated interpretation of signalling during neuronal differentiation in the developing vertebrate embryo

  Dr R Das, Dr S Herbert  No more applications being accepted  Competition Funded PhD Project (Students Worldwide)

About the Project

We invite applications for a fully funded PhD position to work on an exciting project investigating the mechanisms through which differentiating neurons of the vertebrate embryo dynamically interpret extracellular signals to achieve normal axon extension. This question is of critical importance as errors in axon extension are associated with a vast range of neurodevelopmental disorders, including autism spectrum disorders, intellectual disability, and a range of brain malformations. Our work therefore aims to ultimately inform future therapeutic interventions to alleviate or prevent these conditions.

To understand the cellular mechanisms that direct neuronal differentiation in the physiologically relevant context of vertebrate embryonic development, we deploy state-of-the-art timelapse imaging and advanced super-resolution imaging techniques in combination with the latest optogenetic methods to record and manipulate cellular behaviour and function. Our work has demonstrated that neuronal differentiation is punctuated by distinct intermediate cell states. These cell state transitions are regulated through molecular remodelling of the key cellular signal transduction organelle, the primary cilium, which allows differentiating neurons to dynamically re-interpret Sonic Hedgehog (Shh) signalling as they progress through differentiation (1-3).

In addition to Shh signalling, differentiating neurons must also correctly interpret and integrate several other signalling cues, including BMP signalling. Correct interpretation of BMP signalling is first required for initiation of neuronal differentiation and then for axon extension in the correct orientation (4). Furthermore, BMP signalling has recently been shown to also be transduced through the primary cilium (5). However, the mechanisms through which BMP signalling is transduced and actively interpreted by the primary cilium of differentiating neurons to ultimately achieve correct axon extension remain unknown.

This project will investigate:

  • The precise temporal dynamics of the changes in BMP interpretation during neuronal differentiation.
  • The mechanisms through which molecular remodelling of the primary cilium facilitates dynamic interpretation of BMP signalling
  • The molecular mechanisms through which dynamic interpretation of BMP signalling facilitates neuronal differentiation and axon extension.

The successful candidate will join a dynamic and forward-thinking research group with a strong focus on achieving scientific excellence by working together as a team. The candidate will also join a cohort of students in a comprehensive training programme, including student-led symposia and scientific retreats. They will have the opportunity to attend national and international conferences and symposia to present their findings and will benefit from in-depth advice on career progression from the supervisory team.

Relevant links

https://research.manchester.ac.uk/en/persons/raman.das

https://research.manchester.ac.uk/en/persons/shane.herbert

Eligibility

Applicants must have obtained or be about to obtain a First or Upper Second class UK honours degree, or the equivalent qualifications gained outside the UK, in an appropriate area of science, engineering or technology. 

Before you Apply

Applicants must make direct contact with preferred supervisors before applying. It is your responsibility to make arrangements to meet with potential supervisors, prior to submitting a formal online application.

How To Apply

To be considered for this project you MUST submit a formal online application form - full details on eligibility how to apply can be found on the BBSRC DTP website https://www.bmh.manchester.ac.uk/study/research/funded-programmes/bbsrc-dtp/

Your application form must be accompanied by a number of supporting documents by the advertised deadlines. Without all the required documents submitted at the time of application, your application will not be processed and we cannot accept responsibility for late or missed deadlines. Incomplete applications will not be considered. If you have any queries regarding making an application please contact our admissions team [Email Address Removed]

Equality, Diversity and Inclusion

Equality, diversity and inclusion is fundamental to the success of The University of Manchester, and is at the heart of all of our activities. The full Equality, diversity and inclusion statement can be found on the website https://www.bmh.manchester.ac.uk/study/research/apply/equality-diversity-inclusion/

Biological Sciences (4) Medicine (26)

Funding Notes

Studentship funding is for 4 years. This scheme is open to both the UK and international applicants. We are only able to offer a limited number of studentships to applicants outside the UK. Therefore, full studentships will only be awarded to exceptional quality candidates, due to the competitive nature of this scheme.

References

1. G. Toro-Tapia, R.M. Das, Primary cilium remodelling mediates a cell signalling switch in differentiating neurons. Science Advances 6 (21), eabb0601 (2020).
2. I. Kasioulis, R. M. Das*, K.G. Storey*, Inter-dependent apical microtubule and actin dynamics orchestrate centrosome retention and neuronal delamination. eLife 6:e26215, (2017).
*Co-corresponding authors
3. R. M. Das, K. G. Storey, Apical abscission alters cell polarity and dismantles the primary cilium during neurogenesis. Science 343, 200-204 (2014).
4. A. M. Bond, et al., The dynamic role of bone morphogenetic proteins in neural stem cell fate and maturation. Dev Neurobiol 72(7): 1068-1084 (2012).
5. M. Mönnich, et al., CEP128 Localizes to the Subdistal Appendages of the Mother Centriole and Regulates TGF-β/BMP Signaling at the Primary Cilium. Cell Reports 22(10): 2584-2592 (2018).

Where will I study?

Faculty of Biology, Medicine and Health

Tackle real world challenges, make a difference, and elevate your career with postgraduate research in the Faculty of Biology, Medicine and Health at Manchester. From biochemistry to neuroscience, cancer sciences to medicine, audiology to mental health and everything in between, we offer a wide range of postgraduate research projects, programmes and funding which will allow you to immerse yourself in an area of research you’re passionate about.

Why study at Faculty of Biology, Medicine and Health?

Experience PhD life as part of a diverse postgraduate research community of more than 1,000 postgraduate researchers at the 29th most international university in the world (Times Higher Education, 2023).

Ranked the best place to live in the UK (The Economist Global Liveability Index, 2022), Manchester boasts world-class culture, iconic sports, a thriving music and food scene, and much more. It's not just a place to research, it's a place to call home.

With 93% of research activity at the University rated as 'world-leading' or 'internationally excellent' (Research Excellence Framework, 2021), you'll get the chance to have an impact on global health and science challenges.

1000+

postgraduate students

99

PhDs

6

ranked in UK - QS (2025)

Manchester  United Kingdom

main campus

About Faculty of Biology, Medicine and Health

At Manchester, postgraduate researchers are at the heart of our mission to tackle pressing global challenges in biological, medical and healthcare sciences - and you could be too.

By choosing Manchester for your postgraduate research, you’ll be joining a university with an exceptional research reputation, where 93% of research is world-leading or internationally excellent (REF, 2021) and where your work will have real-world impact.

You’ll research in world-class facilities alongside leading experts at the forefront of innovation, collaborating across disciplines to pioneer new treatments, advance scientific knowledge, and improve healthcare globally.

Supported by our dedicated Doctoral Academy and strong industry links, you'll experience PhD life in a vibrant, welcoming and diverse postgraduate research community.

And you’ll leave with the specialist knowledge, research experience and transferable skills that will shape your future in academia, research or industry.


Main campus

The University of Manchester

Manchester

North West

United Kingdom

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