University of East Anglia Featured PhD Programmes
Xi’an Jiaotong-Liverpool University Featured PhD Programmes
University College London Featured PhD Programmes

Developing H/D-exchange mass spectrometry for native membrane protein structural biology

This project is no longer listed on FindAPhD.com and may not be available.

Click here to search FindAPhD.com for PhD studentship opportunities
  • Full or part time
    Dr E Reading
  • Application Deadline
    No more applications being accepted
  • Funded PhD Project (European/UK Students Only)
    Funded PhD Project (European/UK Students Only)

Project Description

Supervisors: Dr. Eamonn Reading (Primary supervisor – KCL), Mr. Malcolm Anderson (Industrial supervisor - Waters Corporation), Prof. Paula Booth (Secondary supervisor – KCL)

Contact: Dr. Eamonn Reading. E-mail: [Email Address Removed] Tel: 020 7848 7508

Membrane proteins are ubiquitous biological macromolecules which reside within dynamic and highly complex cellular lipid membranes. They carry out a multitude of essential, complex biological functions with exquisite specificity within their cell membrane environment and concurrently are key targets for more than half of modern drugs. This makes understanding their fundamental processes a vital task. Currently, most of our structural insights on membrane proteins are gained within purified membrane mimetic systems which lack the context of the native lipid environment. Being able to achieve structural insight into these fundamental biomolecules within more native environments, including in live cells, would be a huge step forward in understanding how they shape cellular function.

The student will develop structural mass spectrometry and protein engineering approaches to decipher native membrane protein structural behaviour. The project will involve advancement and training on cutting-edge H/D eXchange mass spectrometry (HDX-MS) for HDX structural analysis of membrane protein dynamics. With an emphasis being placed on understanding the role of drugs and the lipid metabolism on protein function. Importantly, the student will perform molecular biology and biochemical investigations alongside technology development to fully understand membrane protein behaviour and function.

This project is performed in partnership with Waters Corporation which will include a 3-month placement at the Waters Mass Spectrometry Headquarters facility at Wilmslow, UK. During their placement, Waters Corporation will provide education and training on how a large scientific company is organised and run. This will include meeting members from a variety of departments and disciplines, both formally and informally, to understand their business strategy, hierarchy, and how teams work together.

Please see Reading group website for updated publications list and news from the group of Dr Eamonn Reading: https://www.ereadinglab.com/

Student profile

Applicants must hold, or be expected to achieve, a first or high upper second-class undergraduate honours degree or equivalent (for example BA, BSc, MSci) or a Masters degree in a relevant subject. At least a 2:1 honours degree or equivalent. Students with backgrounds in biological, chemical or physical sciences are welcomed.

Applicants should hold a BSC or Msc in Biochemistry, Biophysics or Chemistry, and have an understanding of protein (bio)chemistry and analytical methods. Experience in protein mass spectrometry and/or protein biochemistry will be a strong advantage. Candidates must have a fascination for interdisciplinary research, excellent communication skills and work well in a team.

Apply

Deadline for applications is 23rd March 2020. We might accept later applications until the position is filled.

Information about the programme’s application procedure can be found on the Centre for Arts & Sciences Admissions webpage: http://www.kcl.ac.uk/study/postgraduate/apply/course-types.aspx.

Candidates should apply for a PhD in Chemistry in the usual way through King’s myApplication system: https://myapplication.kcl.ac.uk/

Funding Notes

This project is funded by a 4-year BBSRC studentship, applicants should ensure they have understood the funding eligibility criteria for these studentships. Unfortunately, international students are not eligible for programme funding on this project.
Eligibility: This scheme only covers funding for Home/EU students.

References

E Reading, Assessing Membrane Protein Structural Dynamics within Lipid Nanodiscs, Trends in Biochemical Sciences, (2019) 44(11):989-990

Martens, C., Shekhar, M., Borysik, A., Reading, E., Lau, A. M., Tajkorshid, E., Booth, P. J. & Politis, A. Direct protein-lipid interactions shape the conformational landscape of secondary transporters. Nat. Commun., (2018) 9:4151.

Reading E., Hall Z., Martens C., Haghighi T., Findlay H., Ahdash Z., Politis A., Booth P. J., Interrogating membrane protein conformational dynamics within native lipid compositions, Angew. Chem. Int. Ed., (2017) 49:15654-57.

A.V. Hateren, M. Anderson, A. Bailey, J.M. Werner, P.J. Skipp, T. Elliott. Direct evidence for conformational dynamics in Major Histocompatibility Complex class I molecules, Journal of Biological Chemistry (2017) 292(49):20255–20269.

A Laganowsky, E Reading, TM Allison, MB Ulmschneider, MT Degiacomi, AJ Baldwin, CV Robinson, Membrane proteins bind lipids selectively to modulate their structure and function, Nature, (2014) 510 (7503):172.



FindAPhD. Copyright 2005-2020
All rights reserved.