About the Project
An important mechanism of gene function is the posttranscriptional modification of mRNA to generate splice variants that generate gene products with alternative functions. Using gene expression data from several human cancers, the group of Dr English has identified differences in mRNA isoform expression that occurs between localised, early stage disease and metastases that are associated with reduced survival.
This PhD project will investigate these differences in more detail to understand underlying regulatory mechanisms that could be exploited for therapy.
Solid tumours are not only made of the genetically transformed cancer cells but also a large number and variety of recruited stromal cells that are needed to drive cancer growth and metastasis. At the moment it is not clear which cells within the tumours are responsible for the differences in isoform expression associated with metastasis and decreased survival. The PhD student will use a combination of bioinformatics analysis of clinical data sets and experimental models of metastasis to determine if the changes in mRNA isoform expression are derived from the cancer cell population, cells in the tumour stroma or a combination of both.
This information will be used to identify the molecular mechanisms responsible for the switch in isoform expression and show that changing isoform expression from ‘bad’ to ‘good’ could provide a new mechanism for treating metastatic disease.
Proposed start date: 01.10.2020 or 01.03.2021
Fees can be found on the University website. The work requires bench fee support of £15,000 per year. The PhD project duration is 3.5 years or 4 years.
Candidates must have a first or upper second class honors degree. This project involves a signficant amount of bioinformatics analysis of DNA and RNAseq datasets and would suit a candidate interested in developing their expertise in this rapidly growing area. The project will also involve ‘wet lab’ based experiments to validate the in silico analysis, including FACs, PCR, FISH and immunofuorescence and immunohistochemical staining of cells and tissues. This PhD will provide the sucessful candiate with a broad range of in silico and wet-lab tecniques and experience.
Interested candidates should in the first instance contact Dr Will English email@example.com
How to apply:
Please complete a University Postgraduate Research Application form available here: www.shef.ac.uk/postgraduate/research/apply
Please clearly state the prospective main supervisor in the respective box and select Oncology and Metabolism as the department.
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