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EASTBIO Monitoring synaptic transmission with a sea snail toxin

  • Full or part time
    Dr J Baranovic
    Dr Matthew Horrocks
  • Application Deadline
    Sunday, January 05, 2020
  • Competition Funded PhD Project (Students Worldwide)
    Competition Funded PhD Project (Students Worldwide)

Project Description

Human brain contains ~100 billion neurons, which communicate through specialized communication ports called synapses. When a neuron fires, it initiates a release of neurotransmitter glutamate (Glu) into the synapse. One of the first proteins to “record” Glu release are called AMPA receptors: their large extracellular domains protrude almost half way across the synapse where they bind Glu. In response to the binding event, AMPA receptors open their integral ion channels (1), allowing influx of Na+ ions and resulting in depolarisation of the membrane of the downstream neuron. If the stimulus is strong enough, the downstream neuron will fire, propagating the excitatory signal through the neuronal network.
The molecular composition of our synapses varies with their activity. For example, synapses that are used repeatedly, through cognitive processes such as memory formation and learning, have higher number of AMPA receptors. Recruitment of AMPA receptors in and out of the synapse is, thus, one of the main molecular mechanisms used by synapses to strengthen or weaken the transmission.
AMPA receptor movements occur at length scales not accessible using conventional fluorescence microscopy. For this reason, super-resolution microscopy has been utilised to visualise them at the nanometre level (2). Such methods require AMPA receptors to be labelled with bright fluorophores such as quantum dots, fluorophore-carrying anti-AMPA receptor antibodies, fluorescent proteins, or similar. These labelling techniques either require genetic manipulation of AMPA receptors (insertion of fluorescent proteins or tags) or rely on labels whose size cannot easily fit into the confined space of the synapse already filled by the large extracellular domains of AMPA receptors (antibodies and quantum dots). Thus, there is a need to develop labels that can reliably report on the movements of native AMPA receptors in and out of the synapse.
This project draws on the “nature’s toolkit” to develop such a label. Its aim is to fluorescently label a naturally occurring peptide, called con-ikot-ikot, for use in super-resolution microscopy of AMPA receptors (3). The peptide is a toxin produced by a fish-hunting sea snail Conus striatus. When injected into the fish, the peptide binds to fish AMPA receptors causing them to over-activate which eventually kills the fish. Con-ikot-ikot is a tiny peptide (~20 kDa) which binds within the extracellular domains of AMPA receptors with very high (nanomolar) affinity. Coupled to a fluorescent dye, the toxin would thus, present a label that would bind to native AMPA receptors, without hindering their ability to move in and out of the synapse. It would allow us to investigate the movements of endogenous AMPA receptors in and out of the synaptic zone, as they respond to the activity of the synapse, a process fundamental to understanding how synapses regulate their strength.
The project is highly interdisciplinary and offers an opportunity to engage in multiple biochemical and biophysical experimental techniques such as purification of the over-expressed toxin, its labelling with fluorescent dyes and use in the super-resolution microscopy.

Funding Notes

The “Visit Website” button will take you to our Online Application checklist. Complete each step and download the checklist which will provide a list of funding options and guide you through the application process. Follow the instructions on the EASTBIO website (you will be directed here from our application checklist), ensuring you upload an EASTBIO application form and transcripts to your application, and ticking the box to request references. Your referees should upload their references using the EASTBIO reference form, in time for the 5th January deadline so please give them plenty of time to do this by applying early.

References

(1) Baranovic, J., Plested, A.: “How to build the fastest receptor on Earth”, Biological Chemistry, 2016, 397, 195-205
(2) Lee, S. H. et al.: “Super-resolution imaging of synaptic and extra-synaptic AMPA receptors with different-sized fluorescent probes”, eLife, 2017, 6:e27744
(3) Walker, C. S. et al.: “A novel Conus snail polypeptide causes excitotoxicity by blocking desensitization of AMPA receptors”, Current Biology, 2009, 19, 900-908

How good is research at University of Edinburgh in Biological Sciences?

FTE Category A staff submitted: 109.70

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