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FULLY FUNDED PHD: Arrival of the fittest: examining the underlying mechanisms of morphological plasticity in an adaptive radiation


Project Description

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Phenotypic plasticity currently drives contentious debate in evolutionary biology (1,2,3).

This debate deals with the role of environmental cues in generating biodiversity, species, and ultimately the utility of the standard Darwinian synthesis (or its extension).

While plasticity is a topic of much empirical research with growing relevance to environmental change, we still lack a general understanding of the underlying mechanisms of plasticity in evolutionary systems.

This studentship will draw on knowledge from bone biology to fill this gap, specifically focusing on how bones interpret the mechanosensory stimuli that instruct their growth and produce adaptive variation.

A central dogma in bone biology is that osteocytes (mechanosensory cells) are the sole mechanism for bone to respond to mechanical stress.

However, not all animals with bones possess osteocytes (most fishes having lost them), and there are emerging alternatives which our preliminary data point toward.
Specifically, our previous research has identified variation in the magnitude of bone plasticity between related species of African cichlids.

Cichlids are an exemplary system for evolutionary biologists in that they are derived from a recent common ancestor but exhibit vast amounts of adaptive skeletal variation.

This variation appears to be controlled by a few mutations on a common genetic background.

So far we have combined plasticity experiments with QTL mapping approaches to identify a number of candidate ‘plasticity genes’ in the craniofacial skeleton.

These genes include members of signalling pathways previously implicated in bone development (Wnts, BMPs, FGFs), and structural genes including rootletin – a key component of the primary cilia and representative of a potential alternative mechanism for mechanosensory function.

These findings provide a strong basis for understanding the molecular and cellular mechanisms involved in plasticity and their contribution to evolution.

The PhD candidate will answer three key questions:
1) What mechanisms underly differences in the magnitude of plasticity?
2) Does bone plasticity rely on the mechanosensory function of the primary cilia when osteocytes are absent?
3) Are mechanisms of plasticity active in natural populations of cichlids?


Methodology:

To address these questions, we will conduct a series of lab rearing experiments in a range of cichlids (~15 species).

These will focus on inducing plastic responses in head morphology and its associated bones using established protocols that vary the position, size, and hardness of food to mimic natural ‘biting’ and ‘suction’ modes of feeding (1).

These experiments will be used in conjunction with a range of lab techniques to understand plasticity mechanisms.

Question 1) will be addressed by assessing gene expression in a subset of cichlids (4 species) undergoing plasticity experiments. Targeting candidate genes for plastic qPCR will be performed on the bony elements of the oral jaws. This will occur at three phases, 2 weeks, 1 month, and 2 months following the initiation of foraging experiments. We predict that our candidate genes will show significant responses to treatment through the duration of the experiment.

For Question 2) we plan to go beyond gene expression to understand the cellular basis of plasticity using novel approaches. Specifically, this will involve culturing cichlid bone cells in vitro and exposing them to nanovibrational stimulation (i.e ‘Nanokicking’) developed by Dalby (4). This technique programmes cells for osteogenesis and would be akin to plastic responses induced in vivo. The resolution afforded by this approach will allow us to observe the activity of primary cilia using fluorescence staining.

Question 3) will build on our knowledge of cichlid morphology. Previous study has determined that divergence primarily involves relative lengthening and shortening of the jaws among species. Ecological generalists are found at the midpoint of morphospace, while specialists are at the extremes. Theory predicts that plasticity would be reduced in extreme phenotypes. We will test this prediction in the lab by using morphometric approaches across species exposed to different foraging modes.

We will complement this lab work with field collections in Africa that will compare the expression levels of candidate genes in species with extreme and intermediate phenotypes. Expression assays from wild fish will be complemented by diet analysis.

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Funding Notes

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Funding is available to cover tuition fees for UK/EU applicants, as well as paying a stipend at the Research Council rate (estimated £15,009 for Session 2019/2020).

Students who have obtained a B.Sc with a 2:1 or higher, or an MRes/Msci in a related topic are welcome to apply

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