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  Innate immunity and dendritic cells


   PhD Programme

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  Dr C Reis e Sousa  No more applications being accepted  Funded PhD Project (Students Worldwide)

About the Project

Talented and motivated students passionate about doing research are invited to apply for this PhD position. The successful applicant will join the Crick PhD Programme in September 2022 and will register for their PhD at one of the Crick partner universities (Imperial College London, King’s College London or UCL).

This 4-year PhD studentship is offered in Dr Caetano Reis e Sousa’s Group based at the Francis Crick Institute (the Crick).

Research in the Immunobiology Laboratory is centred on the receptors and signalling pathways that detect infection, injury and cancer. We have shown that RNA viruses and virally-infected dead cells can be detected by members of the toll-like receptor (TLRs) family, including TLR7 and 3, after endocytosis by specialised sensor cells. We have additionally shown that viruses can be recognised in all cells via cytosolic receptors such as RIG-I, which is activated by viral RNA genomes bearing 5’ tri- or di-phosphates and can be restricted by antiviral RNAi. Finally, we have identified a distinct pathway for immunity to fungi mediated by C-type lectin receptors, which signal via Syk kinase in phagocytes. Notably, our work has also shown that the C-type lectin/Syk pathway is additionally involved in recognition of cell death. For example, one Syk-coupled C-type lectin, DNGR-1, binds to F-actin exposed by dead cells and signals to induce cross-presentation of dead cell-associated antigens. This regulates immunity to cytopathic pathogens and cancer and highlights the notion that cytoskeletal exposure is a sign of tissue damage across species.

Investigation into receptors and signalling pathways goes hand in hand with research into the cells that carry out innate immune detection. These cells include dendritic cells (DCs) and one focus of the lab is on defining DC subtypes and their role. We have identified gene products that can be used to mark DC progenitors or to distinguish different murine DC subtypes, opening the door to selective manipulation of DC and/or DC subsets in mouse models. In addition, we characterised the human equivalents of defined mouse DC subsets and examining their potential as targets for immunotherapeutic intervention. Finally, we study the role of DCs in immunity to cancer and examining how tumours subvert DCs for immune escape. Collectively, the work of the Immunobiology Laboratory helps build a global picture of the cells, receptors and signalling pathways that regulate immunity and have applications in immunotherapy of cancer and infectious diseases.

Only one studentship is available in our group. The precise project will be defined upon discussion with the supervisor. It is likely to centre on new efforts to understand the cell biological and signalling mechanisms that underlie DNGR-1-dependent cross-presentation. 

Candidate background

This studentship is suitable for any candidate with a strong background in biology and experience of working in a research laboratory and of analysing data. The student will receive training in how to formulate scientific questions and design experimental strategies to rigorously address them. In addition, training in data interpretation, data presentation and scientific discourse skills will be provided. The lab utilises a wide variety of molecular and cellular techniques, including animal manipulation, flow cytometry, confocal and intravital microscopy, biochemistry, genetics and molecular biology. Opportunities exist for collaboration with other groups, at Crick and elsewhere.

Applicants should hold or expect to gain a first/upper second-class honours degree or equivalent in a relevant subject and have appropriate research experience as part of, or outside of, a university degree course and/or a Masters degree in a relevant subject.

APPLICATIONS MUST BE MADE ONLINE VIA OUR WEBSITE (ACCESSIBLE VIA THE ‘INSTITUTION WEBSITE’ LINK ABOVE) BY 12:00 (NOON) 11 November 2021. APPLICATIONS WILL NOT BE ACCEPTED IN ANY OTHER FORMAT.

Biological Sciences (4) Medicine (26)

Funding Notes

Successful applicants will be awarded a non-taxable annual stipend of £22,000 plus payment of university tuition fees. Students of all nationalities are eligible to apply.

References

1. Poirier, E.Z., Buck, M.D., Chakravarty, P., Carvalho, J., Frederico, B., Cardoso, A., . . . Reis e Sousa, C. (2021)
An isoform of Dicer protects mammalian stem cells against multiple RNA viruses.
Science 373: 231-236. PubMed abstract
2. Giampazolias, E., Schulz, O., Lim, K.H.J., Rogers, N.C., Chakravarty, P., Srinivasan, N., . . . Reis e Sousa, C. (2021)
Secreted gelsolin inhibits DNGR-1-dependent cross-presentation and cancer immunity.
Cell 184: 4016-4031.e4022. PubMed abstract
3. Canton, J., Blees, H., Henry, C.M., Buck, M.D., Schulz, O., Rogers, N.C., . . . Reis e Sousa, C. (2021)
The receptor DNGR-1 signals for phagosomal rupture to promote cross-presentation of dead-cell-associated antigens.
Nature Immunology 22: 140-153. PubMed abstract
4. Cabeza-Cabrerizo, M., van Blijswijk, J., Wienert, S., Heim, D., Jenkins, R.P., Chakravarty, P., . . . Reis e Sousa, C. (2019)
Tissue clonality of dendritic cell subsets and emergency DCpoiesis revealed by multicolor fate mapping of DC progenitors.
Science Immunology 4: eaaw1941. PubMed abstract
5. Böttcher, J.P., Bonavita, E., Chakravarty, P., Blees, H., Cabeza-Cabrerizo, M., Sammicheli, S., . . . Reis e Sousa, C. (2018)
NK cells stimulate recruitment of cDC1 into the tumor microenvironment promoting cancer immune control.
Cell 172: 1022-1037 e1014. PubMed abstract