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The synthesis and application of small-molecule siderophore vectors to aid new antibiotic discovery


   Department of Chemistry

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  Dr James Hodgkinson, Dr G Mukamolova  No more applications being accepted  Funded PhD Project (Students Worldwide)

About the Project

A major challenge to new antibiotic discovery and overcoming antibiotic resistance is the permeability barrier of the bacterial cell wall to the antibiotic. Overcoming this permeability barrier would provide a powerful way to increase the probability of discovering new antibiotics in compound screening campaigns. Siderophores are natural molecules secreted by bacteria with high affinity for iron essential for bacterial survival and metabolism.1 Bacteria have evolved active transport mechanisms such that the iron-siderophore complex can be readily internalised across the bacterial cell wall to provide an essential source of iron.  

Appropriately functionalised siderophores, could be applied as delivery vectors to facilitate the identification of new small molecules with antibacterial activity otherwise unable to cross the bacterial cell wall.2 This has the potential to increase dramatically the number of antibacterial ‘hits’ identified in compound library screening for new antibiotics. The vectors could also have applications in antibiotic drug design whereby a lead molecule identified with in vitro target inhibition, but inactive in bacterial minimum inhibitory concentration (MIC) screening assays could be rendered active by delivery with the siderophore vector. Additionally, such delivery vectors could be used for other biomolecules, other than antibiotics, potentially serving even broader applications in microbiology and molecular biology.   

The overall aim of the studentship is to synthesise and test novel siderophores that could be used as delivery vectors for active uptake in bacteria culture. The emphasis of the project will focus on Gram-negative pathogens including Pseudomonas aeruginosa and Klebsiella pneumoniae highlighted as ESKAPE pathogens, and Mycobacterium smegmatis with a view to potential future studies in Mycobacterium tuberculosis. To validate the application and use of the siderophore vector, beta-lactam antibiotics will first be functionalised for delivery to enhance beta-lactam uptake and lower MIC values. Once validated, the siderophore vector will then be used to facilitate a general approach with new compound libraries to identify new antibacterial agents for these pathogens. The outcomes of this studentship will lead to new small-molecule chemical tools and screening approaches to aid the discovery of new antibiotics. The student will gain the relevant training and knowledge in the latest techniques in modern synthetic organic chemistry, microbiology, and drug discovery.

Techniques that will be undertaken during the project:

  • Synthetic organic chemistry and medicinal chemistry 
  • NMR spectroscopy, mass spectrometry, HPLC  
  • Bacterial cell culture techniques  
  • Bacterial minimal inhibitory concentration (MIC) assays and iron-uptake assays  

BBSRC Strategic Research Priority: Sustainable Agriculture and Food - Animal Health and Welfare

Understanding the Rules of Life - Microbiology

Integrated Understanding of Health - Pharmaceuticals

 

Start date: 25 September 2023

Entry requirements

  • Those who have a 1st or a 2.1 undergraduate degree in a relevant field are eligible.
  • Evidence of quantitative training is required. For example, AS or A level Maths, IB Standard or Higher Maths, or university level maths/statistics course.
  • Those who have a 2.2 and an additional Masters degree in a relevant field may be eligible.
  • Those who have a 2.2 and at least three years post-graduate experience in a relevant field may be eligible.
  • Those with degrees abroad (perhaps as well as postgraduate experience) may be eligible if their qualifications are deemed equivalent to any of the above.
  • University English language requirements apply

To apply

Carefully read the application advice on our website below and submit your PhD application and MIBTP funding form.  


Funding Notes

All MIBTP students will be provided with a 4 years studentship.
Studentships include:
• Tuition fees at the UK fee rate*
• a tax free stipend which for 2022/3 was £17,668 (2023/24 stipend to be confirmed)
• a travel allowance in year 1
• a travel/conference budget
• a generous consumables budget
• use of a laptop for the duration of the programme.
* International students are welcome to apply but applicants must be able to fund the difference between UK and International fees for the duration of their studies.

References

1. Negash, K.H., Norris, J.K. and Hodgkinson, J.T., 2019. Siderophore–antibiotic conjugate design: New drugs for bad bugs? Molecules, 24(18), 3314.
2. Schalk, I.J., 2018. Siderophore–antibiotic conjugates: exploiting iron uptake to deliver drugs into bacteria. Clinical Microbiology and Infection, 24(8), pp.801-802.
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