Don't miss our weekly PhD newsletter | Sign up now Don't miss our weekly PhD newsletter | Sign up now

  The use of narrow-band LED light in photobioreactors and comparative metabolomics to aid the development of marine microalgae for biotechnology


   Strathclyde Institute of Pharmacy & Biomedical Sciences

This project is no longer listed on FindAPhD.com and may not be available.

Click here to search FindAPhD.com for PhD studentship opportunities
  Dr Katherine Duncan, Prof P Hoskisson  No more applications being accepted  Funded PhD Project (European/UK Students Only)

About the Project

Although algae have been developed in the context of biofuels, the potential of marine microalgae as a source of bioactive specialized metabolites has yet to be investigated systematically. Two barriers exist to their efficient exploitation: (1) reliable tuning of their physiology during cultivation to induce metabolite production and (2) recognizing and characterizing metabolites produced.

Highly-controllable, narrow-waveband light will be employed through the use of modern LEDs Photobioreactors (PBRs) to induce chemically-diverse metabolite production by microalgal strains. The algal metabolites will be extracted profiled and further investigated using tandem mass spectrometry (HR-MS/MS). Both of these measurements are metrological, providing the measurement of tens of thousands of molecules across hundreds of crude fermentation extracts. The HR-MS/MS data will be used to create molecular networks using Global Natural Products Social Molecular Networking. This will allow comparison of complex microalgal crude extracts based on similarities and differences of metabolite fragmentation across multiple strains (up to hundreds). This cutting-edge approach to chemical dereplication of strains allows identification of known metabolites in addition to analogues of known chemicals and thus rapidly identifies areas of unique chemistry for isolation and chemical prioritization (e.g. a particular strain).

Although these recently developed methods have been applied to bacteria, this will be the first study to use these innovative metabolomics approaches to enable the unprecedented biological diversity of microalgae to be investigated. Investigating light conditions (light/dark; flashing; intensity); wavelengths (mono and mixed) coupled with control of other environmental conditions (pH; temperature) will significantly advance microalgae as a biotechnological resource for the discovery of bioactive molecules that may find utility in industry and medicine.

Techniques to be used:
Microbiology, molecular biology, Liquid Chromatography High Resolution Mass Spectrometry (LC-HRMS), molecular networking, metabolomics.


Funding Notes

A 4-year fully funded IBioIC CTP PhD project is available in Strathclyde Institute of Pharmacy and Biomedical Sciences, with funding from IbioIC, the University of Strathclyde Research Excellence Award Scheme and Xanthella Ltd and will involve a 12-month research placement in Xanthella. Candidates should have or expect to have a 1st or 2:1 honours degree in Microbiology, Biomedical Science, Biochemistry, Biotechnology, Molecular Biology, Chemistry or related discipline. Candidates should send their CV and cover letter, detailing their motivation for this project to Dr Katherine Duncan ([Email Address Removed]).

References

Shimizu, Y. (2003) Microalgal metabolites. Curr Opin Microbiol. Jun;6(3):236-43.

Ördög et al. (2004) Screening microalgae for some potentially useful agricultural and pharmaceutical secondary metabolites. Journal of Applied Phycology 16: 309–314.

Wang, M. et al. (2016) Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nat. Biotechnol. 34, 828–837

Where will I study?