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  Cryo-Electron microscopy of cardiac thin filaments


   School of Physiology, Pharmacology & Neuroscience

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  Dr D Paul, Prof J C Hancox  No more applications being accepted  Competition Funded PhD Project (European/UK Students Only)

About the Project

The main components of cardiac thin filaments are actin and the regulatory proteins troponin and tropomyosin which confer Calcium sensitivity. All of these proteins can carry mutations related to heart disease. (Marques and de Oliveira, 2016) To understand the process of muscle regulation and the effects of mutations at a molecular level we need to determine high resolution structures of this macromolecular complex.

Cryo-Electron microscopy (Cryo-EM) provides a means of achieving sub-nanometre 3D structures of these filaments that cannot be crystallised. The recent ‘resolution revolution’ (Callaway, 2015) means that atomic structures are now achievable through Cryo-EM. The acquisition of a state of the art microscope at Bristol and our experience in image processing the thin filament data puts us in an excellent position determine atomic models of the thin filament.

We have successfully isolated zebrafish cardiac thin filaments, a major model for the study of human cardiac disease (Gut et al., 2017) and located the regulatory protein troponin in this data which will allow us to employ our novel image processing procedures (Paul et al., 2010).

Aims
Our aim is to understand the process of muscle regulation and the effects of mutations at a molecular level. 3D atomic models of the thin filament in different functional states will provide insight into the mechanism of regulation (Paul et al., 2017) in addition, we intend to look at the difference in the secondary structure of the proteins caused by mutations that are known to cause cardio myopathies.


Funding Notes

A 3-year fully funded PhD studentship, stipend 2017/18 £14,553 (in additiion to tuition fees). Applications are welcome from enthusiastic, high performing individuals with a 2.1 or 1st Class first degree in a cognate discipline. Applications are also welcome from individuals with a relevant research Masters degree. Open to UK/EU applicants resident in the UK at the time of commencing the course.

References

Gut, P., Reischauer, S., Stainier, D.Y.R., Arnaout, R., 2017. Little Fish, Big Data: Zebrafish as a Model for Cardiovascular and Metabolic Disease. Physiol Rev 97, 889-938.
Marques, M.A., de Oliveira, G.A., 2016. Cardiac Troponin and Tropomyosin: Structural and Cellular Perspectives to Unveil the Hypertrophic Cardiomyopathy Phenotype. Front Physiol 7, 429.
Paul, D.M., Squire, J.M., Morris, E.P., 2010. A novel approach to the structural analysis of partially decorated actin based filaments. J Struct Biol 170, 278-285.
Paul, D.M., Squire, J.M., Morris, E.P., 2017. Relaxed and active thin filament structures; a new structural basis for the regulatory mechanism. J Struct Biol 197, 365-371.
Mozaffarian, D., Benjamin, E.J., Go, A.S., Arnett, D.K., Blaha, M.J., Cushman, M., Das, S.R., de Ferranti, S., Despres, J.P., Fullerton, H.J., Howard, V.J., Huffman, M.D., Isasi, C.R., Jimenez, M.C., Judd, S.E., Kissela, B.M., Lichtman, J.H., Lisabeth, L.D., Liu, S., Mackey, R.H., Magid, D.J., McGuire, D.K., Mohler, E.R., 3rd, Moy, C.S., Muntner, P., Mussolino, M.E., Nasir, K., Neumar, R.W., Nichol, G., Palaniappan, L., Pandey, D.K., Reeves, M.J., Rodriguez, C.J., Rosamond, W., Sorlie, P.D., Stein, J., Towfighi, A., Turan, T.N., Virani, S.S., Woo, D., Yeh, R.W., Turner, M.B., American Heart Association Statistics, C., Stroke Statistics, S., 2016. Heart Disease and Stroke Statistics-2016 Update: A Report From the American Heart Association. Circulation 133, e38-360.

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