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(MRC DTP)Methodology to support the development of prognostic models that incorporate and inform the observation processes within electronic health records

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  • Full or part time
    Dr M Sperrin
    Mr G P Martin
    Dr N Peek
  • Application Deadline
    No more applications being accepted
  • Competition Funded PhD Project (European/UK Students Only)
    Competition Funded PhD Project (European/UK Students Only)

Project Description

There is substantial interest in using the abundance of data available through patients’ electronic health records (EHRs) to develop clinical prediction models (CPMs) that predict whether a person will have an event at some future time point based on what we know about them now [1,2]. CPMs can support both evidence-based decision-making and the recent drive for precision medicine, but challenges remain when modelling within EHRs. Specifically, EHRs usually contain longitudinal information about a patient, through repeated contact with health services, but the observation times and frequency of measurement will vary considerably within and across patients.

For example, suppose a CPM uses lab results and blood pressure to predict the real-time risk of a patient being transferred to an intensive care unit (ICU), thereby facilitating early warning during regular hospital visits. While a patients’ EHR might contain regular blood pressure measurements, their lab results might be observed less frequently. Rather than trying to impute missing risk factors (e.g. lab results) at a given time point, this project will develop methods that allow the CPM to make real-time predictions in their absence (e.g. predict using only blood pressure), and then potentially ‘request’ additional information for certain patients. Such ‘interactive measurement’ would facilitate targeted high-frequency data collection in those at high-risk of adverse outcome (e.g. deterioration towards ICU transfer).

Likewise, if the additional information (e.g. lab results) were available a-priori, then this would reflect the clinician’s beliefs about a patient since the observation frequency contains information on the patient’s underlying health status – so-called informative observation [3]. Incorporating the observation process and the outcome process within CPMs is rarely considered within CPMs, but could allow them to learn from clinical judgements [4,5].

Therefore, this project will: (i) explore the current approaches of incorporating observation processes within CPM development, (ii) develop methods that allow CPMs to handle heterogeneous risk factor measurement frequency, while concurrently informing interactive measurements, and (iii) study the relationships between interactive measurement and informative observation.

For clinical examples, we intend to focus on: 1) discharge versus care escalation in a critical care (hospital) context, and 2) prediction of disease incidence in primary care.

This project would suit students with a strong methodological background in mathematics and (bio)statistics, with particular interest in applying such skills to a medical setting.

Funding Notes

This project is to be funded under the MRC Doctoral Training Partnership. If you are interested in this project, please make direct contact with the Principal Supervisor to arrange to discuss the project further as soon as possible. You MUST also submit an online application form - full details on how to apply can be found on the MRC DTP website www.manchester.ac.uk/mrcdtpstudentships
Applications are invited from UK/EU nationals only. Applicants must have obtained, or be about to obtain, at least an upper second class honours degree (or equivalent) in a relevant subject

References

References
1. Steyerberg EW. Clinical Prediction Models. Springer New York; 2009.
2. Riley RD, Ensor J, Snell KIE, Debray TPA, Altman DG, Moons KGM, Collins GS. External validation of clinical prediction models using big datasets from e-health records or IPD meta-analysis: opportunities and challenges. BMJ. 2016;353:i3140.
3. Sperrin M, Petherick E, Badrick E. Informative Observation in Health Data: Association of Past Level and Trend with Time to Next Measurement. Stud. Health Technol. Inform. 2017;235:261–265.
4. Sun J, Park D, Sun L, Zhao X, Un JS, Ark DP, Un LS, Hao XZ. Semiparametric Regression Analysis of Longitudinal Data With Informative Observation Times Semiparametric Regression Analysis of Longitudinal. 2016;1459:882–889.
5. Alaa AM, Hu S, van der Schaar M. Learning from Clinical Judgments: Semi-Markov-Modulated Marked Hawkes Processes for Risk Prognosis. Proc. 34th Int. Conf. Mach. Learn. 2017; Available from: https://arxiv.org/pdf/1705.05267.pdf.


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