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  Protein-protein interactions in the pantothenate biosynthetic pathway


   Faculty of Biological Sciences

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Prof Michael Webb Dr A Pearson  No more applications being accepted  Competition Funded PhD Project (European/UK Students Only)

About the Project

Protein-protein interactions are critical to the function of many signaling pathways. Their importance in the regulation of central metabolism is less well studied, however PPIs can serve to modulate the catalytic activity of enzymes. In this project you will investigate the structural basis for interactions with enzymes of the pantothenate biosynthetic pathway previously identified via high-throughput screening. You will use a combination of approaches including fluorescence, calorimetry, X-ray crystallography and small angle X-ray scattering to define the shape and affinity of the complexes in solution and then assay the biochemical consequences of their formation.

Funding Notes

4 year BBSRC studentship, under the White Rose Mechanistic Biology DTP.
The successful applicant will receive fees and stipend (c.£13590 for 2013-14). The PhD will start in Oct 2013.Applicants should have, or be expecting to receive, a 2.1 Hons degree in a relevant subject. EU candidates must have been resident in the UK for 3 years in order to receive full support.
There are 2 stages to the application process. Please see our website for more information:
http://www.fbs.leeds.ac.uk/gradschool/keywords/mnuFindaphd.php

References

Formation of a heterooctameric complex between ADC and its cognate activating factor, PanZ, is CoA-dependent Diana C.F. Monteiro, Michael D Rugen, Dale Shepherd, Shingo Nozaki, Niki Hironori and Michael E Webb Biochem. Biophys. Res. Commun. (2012) 426, 350-355

An activator for pyruvoyl-dependent L-aspartate alpha-decarboxylase is conserved in a small group of the gamma-proteobacteria including Escherichia coli Shingo Nozaki, Michael E Webb and Niki Hironori MicrobiologyOpen (2012) 1, 298-310

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Project supervisors

Career overview

Professor Michael Webb is a biological chemist with a particular interest in the emerging field of engineering biology. He obtained his PhD from the University of Cambridge, where he worked with the late Professor Chris Abell. Following this, he undertook postdoctoral research with Professor Stephen Benkovic at Penn State University and Professor Alison Smith in Plant Sciences at Cambridge. Professor Webb joined the School of Chemistry at the University of Leeds as a Lecturer in Chemical Biology in 2007, was promoted to Associate Professor in 2014, and became a Professor of Biological Chemistry in 2023. His research interests lie at the interface of biochemistry and chemistry, and he is a member of the Astbury Centre for Structural Molecular Biology.


Research interests

Professor Webb''s research interests lie at the interface of biochemistry and chemistry, with a particular focus on biosynthesis and mechanistic aspects of protein chemistry. His work has included investigations into the pathways for essential metabolites such as pantothenate (vitamin B5), thiamine (vitamin B1), purines (the building blocks of DNA), and sirohaem, with current studies concentrating on the regulation within these pathways. Recently, he has developed interests in the controlled modification of proteins, the chemical biology of phosphorylation, and the biosynthesis of natural products. Notable highlights from his research include the characterisation of a fifth protein essential for pantothenate biosynthesis in bacteria, the development of methods for quantitative N-terminal labelling of proteins, and the synthesis of stable analogues of phosphorylated histidine. His research group employs a variety of biophysical approaches, including calorimetry, macromolecular crystallography, and organic synthesis. More detailed information about recent research and current projects can be found on the group website.

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