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  Development of a pre clinical model for kidney disease treatment


   Leeds Institute of Molecular Medicine

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Dr S Bell Prof C Inglehearn  Applications accepted all year round  Self-Funded PhD Students Only

About the Project

Prof Colin A. Johnson (Lead supervisor), Prof. Chris Inglehearn (Co-supervisor), Dr. Sandra Bell (Co-supervisor)

Cystic kidney disease that leads to kidney failure is a major cause of renal replacement therapy (dialysis and transplantation) in patients. Cystic kidney disease comprises a group of inherited conditions, also known as “ciliopathies” that are all caused by mutations in genes that encode proteins of the primary cilium or basal body/centrosome, and are a significant cause of childhood morbidity and mortality (Adams et al. J. Med. Genet. 45: 257-267). There are no preventative treatments currently available due to a lack of understanding of the pathogenic molecular mechanisms of these conditions. This research project will investigate the function of two ciliary proteins that are key to understanding the defects in developmental signalling in cystic kidney diseases. This may lead to the rational design of therapeutics to prevent disease progression.
In preliminary work, we have characterized two animal models of Meckel-Gruber syndrome (MKS), a severe human ciliopathy that is characterized by renal cystic dysplasia (Smith et al. Nat. Genet. 38: 191-196). The models are knock-outs for the MKS genes Mks1 and Mks3 which encode the basal body protein MKS1 and the putative Frizzled-like orphan receptor meckelin. Both models have a severe and unexpected impairment of canonical Wnt signalling. Our overall hypothesis is that the normal differentiation of renal tubular epithelium is dependent on the precise regulation of canonical Wnt signalling, and that defects in this signalling are causal for cyst formation. In the first instance, the PhD student will do further functional characterization of the Wnt signalling defects during kidney development of mouse embryos and neonates, and during ex vivo kidney organogenesis. Depending on the initial findings, we will then test if dysregulation of Wnt signalling in the disease state can be prevented by treatment with small molecule inhibitors, and whether this ameliorates cystogenesis. During the studentship, we also anticipate that there will be further opportunities to develope and characterize other models of human ciliopathies such as that described by Valente et al. Nat. Genet. 42: 619-625).
The aim of the project is to use a broad range of techniques to establish a pre-clinical animal model of a severe human inherited condition. The PhD student will gain experience of developmental biology and molecular biology laboratory techniques including cell culture, ex vivo embryonic kidney organoculture, confocal microscopy, live cell imaging, transcript analysis, RT-PCR and immunohistochemistry.





Funding Notes

The PhD project is based in the Section of Ophthalmology and Neuroscience (OPNE), Leeds Institute of Molecular Medicine (LIMM), University Of Leeds, Leeds, U.K.
Informal enquiries should be addressed to [Email Address Removed]. This project is available immediately to self-funded applicants with government scholarships or other sources of funding. Tuition and bench fees are payable for this project. Exceptional applicants will be nominated for Leeds University-funded Scholarships at the discretion of the supervisors.





Where will I study?


Project supervisors

Career overview

Dr Sandra M Bell obtained a BSc (Hons.) in Biochemistry from the University of Sussex in 1987 and a PhD in Colon Cancer Genetics from the University of Leeds in 1992. She developed an interest in cancer research and worked on positional cloning projects in breast and bladder cancer. In 1996, Dr Bell joined the genetics section of the Molecular Medicine Unit, where she worked on various projects, including the identification of two neurodevelopmental genes, MCPH1 and CSMD1. In 2005, she became a member of the newly formed section of Ophthalmology and Neuroscience, establishing her own group to investigate the functions of MCPH1 and CSMD1 in cancer. Dr Bell has been involved in high-throughput screening techniques and has contributed to the understanding of the role of these genes in breast and ovarian cancers, particularly in relation to drug resistance and synthetic lethality. She is a founding member of the BioScreening Technology Group, which focuses on high-throughput siRNA screens.


Research interests

Dr Bell''s research focuses on breast and ovarian cancer, particularly investigating the functional roles of neurodevelopmental genes MCPH1 and CSMD1 in cancer. Her group conducts functional studies on MCPH1, which is associated with primary microcephaly and implicated in DNA repair and regulation of cell cycle checkpoints. Dr Bell''s research suggests that while germline defects in MCPH1 lead to microcephaly, somatic defects may contribute to cancer development. She has identified reduced Microcephalin expression in breast and ovarian cancers, correlating with decreased patient survival, and is studying its biological function to understand how its disruption leads to cancer. Additionally, her group employs high-throughput screening techniques using small molecule and whole human genome siRNA libraries to elucidate the function of MCPH1 and identify synthetic lethal genes. Dr Bell also investigates CSMD1, a gene deleted in various cancer types, and its role as an independent prognostic factor in breast cancer, using both in vitro and in vivo models to explore its function.

View Dr Sandra M Bell's profile 
Career overview

Professor Chris F Inglehearn''s career in human genetics commenced with a Wellcome Trust Senior Basic Biomedical Fellowship at the Institute of Ophthalmology, UCL from 1992 to 1997. After five years, he transitioned to the School of Medicine at the University of Leeds, supported by a renewed Wellcome Fellowship, and was appointed Professor of Molecular Ophthalmology in February 2001. At Leeds, he established the Leeds Vision Research Group and later the Division of Molecular Medicine, which he currently heads. His research interests encompass diseases affecting vision, tooth development, and brain function. Professor Inglehearn''s research group employs genetics and genomics techniques, including next-generation and third-generation sequencing technologies, bioinformatics, cell and molecular biology, genome editing, and stem cell research, to elucidate the genetic and functional underpinnings of various inherited disorders. He collaborates extensively with national and international groups, being a leading member of the UK and European Retinal Disease consortia and part of the UK 100,000 genomes ''Eyes and ears'' Clinical Interpretation panel. From 2013 to 2017, he coordinated the EyeTN EU Initial Training Network, which supported 12 PhD students across seven European laboratories. To date, he has supervised 30 PhD students to successful completion and has authored or co-authored over 213 research papers on topics such as human inherited blindness, enamel defects, and brain disorders. His research outputs include significant contributions to the understanding of Mendelian diseases affecting the retina, such as retinitis pigmentosa and associated syndromes. He has also made strides in dental genetics, particularly in amelogenesis imperfecta, identifying numerous genes involved in this condition and establishing a comprehensive mutation database and diagnostic screening service in collaboration with the NHS. Additionally, he has engaged in psychosis research, exploring the genetic basis of schizophrenia in consanguineous populations. Professor Inglehearn holds a BSc in Biological Sciences from the University of Edinburgh (1984) and a PhD in Molecular Genetics from the same institution (1988). He has served on various professional boards and committees, contributing to the advancement of research in ophthalmology and genetics. In his educational role, he lectures and teaches medical undergraduates and MSc students on human inherited diseases and has extensive experience supervising PhD candidates.


Research interests

Professor Inglehearn''s research focuses on human genetics and vision research, particularly in the areas of inherited blindness, tooth and enamel development defects, and schizophrenia and intellectual disability. He leads the Leeds Vision Research Group, which investigates the genetic basis of Mendelian diseases affecting the retina, including retinitis pigmentosa, Cone-Rod Dystrophy, and Leber Congenital Amaurosis. The group employs genetics and genomics techniques, such as next-generation sequencing, bioinformatics, and genome editing, to identify genetic causes and explore therapeutic strategies for these conditions. Additionally, Professor Inglehearn''s work in the Leeds Dental Genetics Group examines inherited conditions related to dental development, particularly Amelogenesis Imperfecta, an incurable disorder caused by mutations in multiple genes. His research has led to the identification of 14 genes associated with this condition and the establishment of a comprehensive mutation database and diagnostic screening service. Professor Inglehearn is also involved in the Leeds Psychosis Research Group, which studies the genetic underpinnings of schizophrenia, particularly in consanguineous populations. This research includes epidemiological studies and genetic screening in collaboration with international partners. Overall, his work has resulted in over 213 research papers, contributing significantly to the understanding of inherited disorders affecting vision and dental health.

View Professor Chris F Inglehearn's profile