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  *EPSRC* Developing realistic mathematical models of cell movement and interaction


   School of Biological Sciences

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Prof Ramon Grima  No more applications being accepted  Competition Funded PhD Project (European/UK Students Only)

About the Project

Cell movement and cell-cell interactions play key roles in determining correlations in the relative cell positions and velocities in cell populations. Mathematical models of such systems have typically been deterministic, i.e., consisting of a set of coupled partial differential equations describing the temporal and spatial evolution of the local cell number density. However it is well known that such models are only accurate in the limit of large population densities. It is often the case that the number density of cells is low in some regions of space; in such a scenario, random fluctuations in the cell numbers become important and cannot be neglected. Stochastic models hence constitute a more general framework for modelling cell populations but their analysis is substantially more difficult than that of deterministic models. In this project, the aim is to develop novel methods to extract biologically relevant information from stochastic models of cell populations, as well as to develop new computationally efficient means of simulating such models.

This project is ideal for a student with a Bachelors or Masters in Applied Mathematics, Physics or Engineering. Previous familiarity with mathematical modelling in biology is useful but not a necessity.

The student will be given extensive interdisciplinary training in deterministic and stochastic modelling in biology in their first year to ensure a solid foundation. The student will be co-supervised by Dr. Ramon Grima (http://grimagroup.bio.ed.ac.uk/index.html) and Dr. Nikola Popovic (http://www.maths.ed.ac.uk/school-of-mathematics/people?person=148) and will be part of the Centre for Synthetic and Systems Biology (SynthSys) at the University of Edinburgh.

Funding Notes

This project is eligible for EPSRC funding and is open to UK nationals (or EU students who have been resident in the UK for 3+ years immediately prior to the programme start date)

Deadline for applications: 27 July 2018

References

Newman TJ, Grima R. 2004. Many-body theory of chemotactic interactions. Physical Review E. 70:051916.

Grima R. 2008. Multiscale modeling of biological pattern formation. Current Topics in Developmental Biology. 81:435.

Middleton A, Fleck C and Grima R. 2014. A continuum approximation to an off-lattice, individual-cell based model of cell migration and adhesion. Journal of Theoretical Biology 359: 220

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Project supervisors

Career overview

Ramon Grima obtained a B.Sc (Hons) in Physics and Pure Mathematics from the University of Malta in 2000, followed by an M.A. in Physics from the University of Virginia in 2002. He completed a Ph.D. in Physics at Arizona State University in 2005. After his doctoral studies, he was a Postdoctoral Fellow at the School of Informatics, Indiana University, from 2005 to 2006. He then held the position of Mathematical Institute Fellow at Imperial College London from 2006 to 2008. Grima joined the University of Edinburgh in 2008 as a Lecturer, progressed to Reader in 2013, and was promoted to Professor in 2019. His research focuses on the chemical master equation in biochemical systems, particularly gene regulatory networks, and he has developed interests in the reaction-diffusion master equation and parameter estimation methods for gene regulatory networks.


Research interests

Ramon Grima's research focuses on the exact or approximate solution of the chemical master equation describing biochemical systems, particularly gene regulatory networks. They are also interested in the approximate solution of the reaction-diffusion master equation, considering the complex nature of the cytoplasm, including phenomena such as macromolecular crowding. A main aim is to obtain closed-form solutions for the approximate distributions of molecule numbers, which can provide insights into stochastic intracellular dynamics and how living cells have evolved to manage inherent noise. Recently, there has been a growing interest in developing efficient methods for estimating parameter values for gene regulatory networks from single cell and population snapshot data.

View Professor Ramon Grima's profile